PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do022572.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 97aa    MW: 10192.5 Da    PI: 10.3802
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do022572.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH223e-0733692154
                HHHHCTSCC.C....TTS-.STCHHHHHHHHHHHHHH CS
         HLH 21 eeLrellPk.as.kapskK.lsKaeiLekAveYIksL 54
                ++Lr llP+ a  +a+++K  s a++Le+++ YI+ L
  Do022572.1 33 SRLRALLPPgAAaAANGGKaASTAQVLEETCVYIRRL 69
                79*******87799999999***************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-43284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-43369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MSSSSRRIRR RSPPSTSPAA LDEQAAVADE LVSRLRALLP PGAAAAANGG KAASTAQVLE  60
ETCVYIRRLH AEVDGLAERL ARLLEDPSAA GGSGRRW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652899.11e-12PREDICTED: transcription factor ILI1
SwissprotA2XY475e-14ILI1_ORYSI; Transcription factor ILI1
SwissprotQ7X7425e-14ILI1_ORYSJ; Transcription factor ILI1
TrEMBLJ3N9I11e-13J3N9I1_ORYBR; Uncharacterized protein
STRINGOB11G24670.13e-13(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3741233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.12e-10bHLH family protein